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# LLM Wiki Agent — Schema & Workflow Instructions
This wiki is maintained entirely by Gemini CLI. No API key or Python scripts needed — just open this repo with `gemini` and talk to it.
## How to Use
Describe what you want in plain English:
- *"Ingest this file: raw/papers/my-paper.md"*
- *"What does the wiki say about transformer models?"*
- *"Check the wiki for orphan pages and contradictions"*
- *"Build the knowledge graph"*
Or use shorthand triggers:
- `ingest <file>` → runs the Ingest Workflow
- `query: <question>` → runs the Query Workflow
- `lint` → runs the Lint Workflow
- `build graph` → runs the Graph Workflow
---
## Directory Layout
```
raw/ # Immutable source documents — never modify these
wiki/ # Agent owns this layer entirely
index.md # Catalog of all pages — update on every ingest
log.md # Append-only chronological record
overview.md # Living synthesis across all sources
sources/ # One summary page per source document
entities/ # People, companies, projects, products
concepts/ # Ideas, frameworks, methods, theories
syntheses/ # Saved query answers
graph/ # Auto-generated graph data
tools/ # Optional standalone Python scripts
```
---
## Page Format
Every wiki page uses this frontmatter:
```yaml
---
title: "Page Title"
type: source | entity | concept | synthesis
tags: []
sources: []
last_updated: YYYY-MM-DD
---
```
Use `[[PageName]]` wikilinks to link to other wiki pages.
---
## Ingest Workflow
Triggered by: *"ingest <file>"*
1. Read the source document fully
2. Read `wiki/index.md` and `wiki/overview.md` for current wiki context
3. Write `wiki/sources/<slug>.md` (source page format below)
4. Update `wiki/index.md` — add entry under Sources
5. Update `wiki/overview.md` — revise synthesis if warranted
6. Update/create entity and concept pages
7. Flag contradictions with existing wiki content
8. Append to `wiki/log.md`: `## [YYYY-MM-DD] ingest | <Title>`
### Source Page Format
```markdown
---
title: "Source Title"
type: source
tags: []
date: YYYY-MM-DD
source_file: raw/...
---
## Summary
24 sentence summary.
## Key Claims
- Claim 1
## Key Quotes
> "Quote here"
## Connections
- [[EntityName]] — how they relate
## Contradictions
- Contradicts [[OtherPage]] on: ...
```
### Domain-Specific Templates
If the source falls into a specific domain (e.g., personal diary, meeting notes), the agent should use a specialized template instead of the default generic one above:
#### Diary / Journal Template
```markdown
---
title: "YYYY-MM-DD Diary"
type: source
tags: [diary]
date: YYYY-MM-DD
---
## Event Summary
...
## Key Decisions
...
## Energy & Mood
...
## Connections
...
## Shifts & Contradictions
...
```
#### Meeting Notes Template
```markdown
---
title: "Meeting Title"
type: source
tags: [meeting]
date: YYYY-MM-DD
---
## Goal
...
## Key Discussions
...
## Decisions Made
...
## Action Items
...
```
---
## Query Workflow
Triggered by: *"query: <question>"*
1. Read `wiki/index.md` — identify relevant pages
2. Read those pages
3. Synthesize answer with `[[PageName]]` citations
4. Offer to save as `wiki/syntheses/<slug>.md`
---
## Lint Workflow
Triggered by: *"lint"*
Check for: orphan pages, broken links, contradictions, stale content, missing entity pages, data gaps.
---
## Graph Workflow
Triggered by: *"build graph"*
Try `python tools/build_graph.py --open` first. If unavailable, build graph.json and graph.html manually from wikilinks.
---
## Naming Conventions
- Source slugs: `kebab-case`
- Entity/Concept pages: `TitleCase.md`
## Log Format
`## [YYYY-MM-DD] <operation> | <title>`